Well we had a breakthrough this morning! At least the batch execution now seems to run as expected. We will conclude after running the batch through the night and tomorrow. Anyway all news are good news right now.
After investigating the AOS server used to run the AIF batch(es), we discovered some deviations in Performance Manager (high number of page faults and hence PF Delta). This led us to change the Batch Group and switch to another AOS server. After this we have been able to automatically process inbound and outbounde messages. If the batch survives the night and tomorrow, we will take actions on the faulting AOS by unistalling/cleaning up and installing a new AOS instance. The only load on the suspicious server right now, is generated by the BizTalk Adapter (.NET Business Connector).
After spending long days in the office since last Friday, I'm heading home more optimistic than ever.
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